pyiron_base
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A
ABCTraitsMeta (class in pyiron_base.storage.has_stored_traits)
accept_crash (pyiron_base.jobs.job.extension.server.generic.Server property)
accepted_return_codes (pyiron_base.jobs.job.extension.executable.Executable property)
adapter (pyiron_base.state.queue_adapter.QueueAdapters property)
add (pyiron_base.jobs.datamining.TableJob property)
add() (pyiron_base.state.publications.Publications method)
add_array() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
add_chunk() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
add_column() (pyiron_base.database.generic.DatabaseAccess method)
add_item_dict() (pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
add_labels() (pyiron_base.utils.units.PyironUnitRegistry method)
add_module_conversion() (in module pyiron_base.project.maintenance)
add_quantity() (pyiron_base.utils.units.PyironUnitRegistry method)
always_true() (in module pyiron_base.jobs.datamining)
always_true_pandas() (in module pyiron_base.jobs.datamining)
analysis_project (pyiron_base.jobs.datamining.TableJob property)
append() (pyiron_base.jobs.master.generic.GenericMaster method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.utils.parser.Logstatus method)
apply_func() (pyiron_base.utils.parser.LogTag method)
arg() (pyiron_base.utils.parser.LogTag method)
attribute (pyiron_base.jobs.script.ScriptJob attribute)
AutorestoredConnection (class in pyiron_base.database.generic)
available_versions (pyiron_base.jobs.job.extension.executable.Executable property)
B
base (pyiron_base.project.generic.Project property)
base_name (pyiron_base.jobs.job.path.JobPath property)
(pyiron_base.project.generic.Project attribute)
(pyiron_base.project.path.GenericPath property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
(pyiron_base.storage.hdfio.FileHDFio property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
base_to_code() (pyiron_base.utils.units.UnitConverter method)
base_to_code_pint() (pyiron_base.utils.units.UnitConverter method)
base_to_code_value() (pyiron_base.utils.units.UnitConverter method)
base_to_current() (pyiron_base.project.maintenance.UpdateMaintenance method)
base_units() (pyiron_base.utils.units.UnitConverter method)
base_v0_3_to_v0_4() (pyiron_base.project.maintenance.UpdateMaintenance method)
BaseTools (class in pyiron_base.jobs.job.toolkit)
C
catch_signals() (in module pyiron_base.state.signal)
change_column_type() (pyiron_base.database.generic.DatabaseAccess method)
check_all_childs_finished() (pyiron_base.jobs.master.flexible.FlexibleMaster method)
check_if_job_exists() (pyiron_base.jobs.job.core.JobCore method)
check_setup() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
child_hdf() (pyiron_base.jobs.master.generic.GenericMaster method)
child_ids (pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.jobs.master.generic.GenericMaster property)
child_names (pyiron_base.jobs.master.generic.GenericMaster property)
child_project (pyiron_base.jobs.master.generic.GenericMaster property)
child_runtime (pyiron_base.jobs.worker.WorkerJob property)
clear() (pyiron_base.storage.datacontainer.DataContainerBase method)
clear_all() (pyiron_base.storage.parameters.GenericParameters method)
clear_job() (pyiron_base.jobs.job.generic.GenericJob method)
close() (pyiron_base.database.generic.AutorestoredConnection method)
(pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.path.ProjectPath method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.hdfio.FileHDFio method)
close_connection() (pyiron_base.database.manager.DatabaseManager method)
code_to_base() (pyiron_base.utils.units.UnitConverter method)
code_to_base_pint() (pyiron_base.utils.units.UnitConverter method)
code_to_base_value() (pyiron_base.utils.units.UnitConverter method)
code_units() (pyiron_base.utils.units.UnitConverter method)
collect_logfiles() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.jobs.script.ScriptJob method)
collect_output() (pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.jobs.script.ScriptJob method)
combine_mat() (pyiron_base.utils.parser.Logstatus method)
combine_xyz() (pyiron_base.utils.parser.Logstatus method)
comment_char (pyiron_base.storage.parameters.GenericParameters property)
commit() (pyiron_base.database.generic.AutorestoredConnection method)
compress() (pyiron_base.jobs.job.core.JobCore method)
compress_dir() (in module pyiron_base.project.archiving.export_archive)
compress_jobs() (pyiron_base.project.generic.Project method)
conda_environment (pyiron_base.project.generic.Project property)
conda_environment_name (pyiron_base.jobs.job.extension.server.generic.Server property)
conda_environment_path (pyiron_base.jobs.job.extension.server.generic.Server property)
configuration (pyiron_base.state.settings.Settings property)
connection_timeout (pyiron_base.database.manager.DatabaseManager property)
ConnectionWatchDog (class in pyiron_base.database.generic)
construct_adapters() (pyiron_base.state.queue_adapter.QueueAdapters method)
content (pyiron_base.jobs.job.core.JobCore property)
convergence_check() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
convert_path_to_abs_posix() (pyiron_base.state.settings.Settings method)
(pyiron_base.state.settings.Settings static method)
convert_str_to_class() (pyiron_base.jobs.job.jobtype.JobType static method)
convert_to_object (pyiron_base.jobs.datamining.TableJob property)
(pyiron_base.project.jobloader.JobInspector attribute)
(pyiron_base.project.jobloader.JobLoader attribute)
convert_unit() (pyiron_base.utils.parser.Logstatus method)
copy() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.project.generic.Project method)
(pyiron_base.project.path.GenericPath method)
(pyiron_base.project.path.ProjectPath method)
(pyiron_base.storage.datacontainer.DataContainer method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.flattenedstorage.FlattenedStorage method)
(pyiron_base.storage.hdfio.FileHDFio method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
copy_file_to_working_directory() (pyiron_base.jobs.job.generic.GenericJob method)
copy_files_to_archive() (in module pyiron_base.project.archiving.export_archive)
copy_template() (pyiron_base.jobs.job.generic.GenericJob method)
copy_to() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.project.generic.Project method)
cores (pyiron_base.jobs.job.extension.server.generic.Server property)
cores_per_job (pyiron_base.jobs.worker.WorkerJob property)
create (pyiron_base.project.generic.Project property)
create_child_job() (pyiron_base.jobs.master.parallel.ParallelMaster method)
create_from_job() (pyiron_base.project.generic.Project method)
create_group() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.hdfio.FileHDFio method)
create_hdf() (pyiron_base.project.generic.Project static method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
create_job() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.project.generic.Project method)
create_job_class() (pyiron_base.project.generic.Project static method)
create_job_factory() (in module pyiron_base.jobs.flex.factory)
create_project_from_hdf5() (pyiron_base.storage.hdfio.FileHDFio method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
create_table() (pyiron_base.jobs.datamining.PyironTable method)
(pyiron_base.project.generic.Project method)
create_working_directory() (pyiron_base.storage.hdfio.ProjectHDFio method)
Creator (class in pyiron_base.project.generic)
credentials (pyiron_base.state.settings.Settings property)
current (pyiron_base.utils.parser.LogTag property)
D
data (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.generic.Project property)
(pyiron_base.storage.filedata.FileData property)
(pyiron_base.storage.filedata.FileDataTemplate property)
database (pyiron_base.database.manager.DatabaseManager property)
(pyiron_base.interfaces.object.HasDatabase property)
(pyiron_base.jobs.job.extension.jobstatus.JobStatus property)
(pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
(pyiron_base.state.State attribute)
(pyiron_base.state.State property)
database() (in module pyiron_base.state.update)
database_entry (pyiron_base.jobs.job.core.JobCore property)
database_is_disabled (pyiron_base.database.manager.DatabaseManager property)
DatabaseAccess (class in pyiron_base.database.generic)
DatabaseManager (class in pyiron_base.database.manager)
DatabaseProperties (class in pyiron_base.jobs.job.core)
DatabaseStatistics (class in pyiron_base.database.performance)
DataContainer (class in pyiron_base.storage.datacontainer)
DataContainerBase (class in pyiron_base.storage.datacontainer)
db (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.generic.Project property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
db_entry() (pyiron_base.jobs.job.extension.server.generic.Server method)
(pyiron_base.jobs.job.generic.GenericJob method)
db_filter_function (pyiron_base.jobs.datamining.PyironTable property)
(pyiron_base.jobs.datamining.TableJob property)
decompress() (pyiron_base.jobs.job.core.JobCore method)
default_assumed_file_type (pyiron_base.storage.filedata.FileLoader attribute)
default_configuration (pyiron_base.state.settings.Settings property)
default_version (pyiron_base.jobs.job.extension.executable.Executable property)
define_blocks() (pyiron_base.storage.parameters.GenericParameters method)
defragment_storage() (pyiron_base.project.maintenance.LocalMaintenance method)
del_array() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
delete_item() (pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
delete_output_files_jobs() (pyiron_base.project.generic.Project method)
Deprecator (class in pyiron_base.utils.deprecate)
detect_bug() (in module pyiron_base.project.update.pyiron_base_03x_to_04x)
disable_mpi4py() (pyiron_base.jobs.script.ScriptJob method)
drop_status_to_aborted() (pyiron_base.jobs.job.generic.GenericJob method)
dtype_dict (pyiron_base.utils.units.PyironUnitRegistry property)
DummyHDFio (class in pyiron_base.storage.hdfio)
dump() (in module pyiron_base.project.external)
dyn_tags (pyiron_base.utils.parser.LogTag property)
E
enable_mpi4py() (pyiron_base.jobs.script.ScriptJob method)
end_value_char (pyiron_base.storage.parameters.GenericParameters property)
enforce_update (pyiron_base.jobs.datamining.TableJob property)
environment_configuration_map (pyiron_base.state.settings.Settings property)
environment_credential_map (pyiron_base.state.settings.Settings property)
exclude_groups_hdf (pyiron_base.jobs.job.generic.GenericJob property)
exclude_nodes_hdf (pyiron_base.jobs.job.generic.GenericJob property)
Executable (class in pyiron_base.jobs.job.extension.executable)
executable (pyiron_base.jobs.job.generic.GenericJob property)
executable_path (pyiron_base.jobs.job.extension.executable.Executable property)
ExecutableContainerJob (class in pyiron_base.jobs.flex.executablecontainer)
execute() (pyiron_base.database.generic.AutorestoredConnection method)
execute_job_with_external_executable() (in module pyiron_base.jobs.job.runfunction)
execute_once() (pyiron_base.database.generic.AutorestoredConnection method)
executor (pyiron_base.jobs.job.extension.server.generic.Server property)
executor_type (pyiron_base.jobs.job.generic.GenericJob property)
export_database() (in module pyiron_base.project.archiving.export_archive)
extend() (pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.flattenedstorage.FlattenedStorage method)
extract_archive() (in module pyiron_base.project.archiving.import_archive)
extract_data_from_file() (in module pyiron_base.utils.parser)
extract_data_from_str_lst() (in module pyiron_base.utils.parser)
extract_file() (pyiron_base.utils.parser.Logstatus method)
extract_from_list() (pyiron_base.utils.parser.Logstatus method)
extract_item() (pyiron_base.utils.parser.Logstatus static method)
F
File (class in pyiron_base.jobs.job.extension.files)
file_configuration_map (pyiron_base.state.settings.Settings property)
file_credential_map (pyiron_base.state.settings.Settings property)
file_exists (pyiron_base.storage.hdfio.FileHDFio attribute)
file_name (pyiron_base.storage.hdfio.FileHDFio attribute)
(pyiron_base.storage.parameters.GenericParameters property)
file_path (pyiron_base.jobs.job.path.JobPath property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
(pyiron_base.storage.hdfio.FileHDFio property)
FileAdapter (class in pyiron_base.storage.fileio)
FileBrowser (class in pyiron_base.jobs.job.extension.files)
FileData (class in pyiron_base.storage.filedata)
FileDataTemplate (class in pyiron_base.storage.filedata)
FileHDFio (class in pyiron_base.storage.hdfio)
FileLoader (class in pyiron_base.storage.filedata)
files (pyiron_base.jobs.job.core.JobCore property)
files_to_compress (pyiron_base.jobs.job.core.JobCore property)
files_to_remove (pyiron_base.jobs.job.core.JobCore property)
FileTable (class in pyiron_base.database.filetable)
FileTableSingleton (class in pyiron_base.database.filetable)
filter (pyiron_base.jobs.datamining.PyironTable property)
(pyiron_base.jobs.datamining.TableJob property)
filter_function (pyiron_base.jobs.datamining.PyironTable property)
(pyiron_base.jobs.datamining.TableJob property)
filter_function() (in module pyiron_base.database.filetable)
(in module pyiron_base.project.archiving.export_archive)
find_chunk() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
finished (pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
first_child_name() (pyiron_base.jobs.master.generic.GenericMaster method)
fix_ipython_autocomplete() (in module pyiron_base.utils.jedi)
FlattenedStorage (class in pyiron_base.storage.flattenedstorage)
FlexibleMaster (class in pyiron_base.jobs.master.flexible)
force_reset() (pyiron_base.database.filetable.FileTable method)
format_docstring_with_statuses() (in module pyiron_base.jobs.job.extension.jobstatus)
from_db_entry() (pyiron_base.jobs.job.path.JobPath class method)
from_dict() (pyiron_base.interfaces.has_dict.HasDict method)
(pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
(pyiron_base.jobs.flex.pythonfunctioncontainer.PythonFunctionContainerJob method)
(pyiron_base.jobs.job.extension.executable.Executable method)
(pyiron_base.jobs.job.extension.server.generic.Server method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.script.ScriptJob method)
(pyiron_base.storage.parameters.GenericParameters method)
from_hdf() (pyiron_base.interfaces.has_hdf.HasHDF method)
(pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.extension.server.generic.Server method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.job.template.TemplateJob method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.generic.GenericMaster method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
(pyiron_base.storage.parameters.GenericParameters method)
from_hdf_args() (pyiron_base.interfaces.has_hdf.HasHDF class method)
(pyiron_base.jobs.job.generic.GenericJob class method)
from_job_id() (pyiron_base.jobs.job.path.JobPath class method)
function_lst (pyiron_base.jobs.master.flexible.FlexibleMaster property)
FunctionContainer (class in pyiron_base.jobs.datamining)
future (pyiron_base.jobs.job.extension.server.generic.Server property)
G
generate_list_of_directories() (in module pyiron_base.project.archiving.export_archive)
GenericError (class in pyiron_base.jobs.job.generic)
GenericJob (class in pyiron_base.jobs.job.generic)
GenericMaster (class in pyiron_base.jobs.master.generic)
GenericOutput (class in pyiron_base.jobs.master.parallel)
GenericParameters (class in pyiron_base.storage.parameters)
GenericPath (class in pyiron_base.project.path)
get() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.hdfio.FileHDFio method)
(pyiron_base.storage.parameters.GenericParameters method)
get_array() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
get_array_filled() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
get_array_ragged() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
get_attribute() (pyiron_base.storage.parameters.GenericParameters method)
get_child_cores() (pyiron_base.jobs.master.generic.GenericMaster method)
get_child_ids() (in module pyiron_base.database.jobtable)
(pyiron_base.database.filetable.FileTable method)
(pyiron_base.project.generic.Project method)
get_custom_dict() (pyiron_base.project.external.Notebook static method)
get_database_statistics() (in module pyiron_base.database.performance)
(pyiron_base.project.maintenance.GlobalMaintenance method)
get_dataframe() (pyiron_base.jobs.datamining.PyironTable method)
(pyiron_base.jobs.datamining.TableJob method)
get_db_columns() (pyiron_base.database.interface.IsDatabase method)
(pyiron_base.project.generic.Project method)
get_dtype() (pyiron_base.utils.units.PyironUnitRegistry method)
get_dtype_and_fill() (in module pyiron_base.storage.flattenedstorage)
get_external_input() (pyiron_base.project.generic.Project static method)
get_extract() (pyiron_base.database.filetable.FileTable static method)
get_folder_size() (in module pyiron_base.project.size)
get_from_table() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.storage.hdfio.FileHDFio method)
get_function_from_string() (in module pyiron_base.jobs.master.generic)
get_function_parameter_dict() (in module pyiron_base.jobs.flex.pythonfunctioncontainer)
get_h5_path() (in module pyiron_base.storage.helper_functions)
get_hamilton_from_file() (in module pyiron_base.database.filetable)
get_hamilton_version_from_file() (in module pyiron_base.database.filetable)
get_hash() (in module pyiron_base.jobs.flex.pythonfunctioncontainer)
get_historical_table() (in module pyiron_base.database.tables)
get_input_for_subprocess_call() (pyiron_base.jobs.job.extension.executable.Executable method)
get_item() (pyiron_base.utils.parser.LogTag method)
get_item_by_id() (pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
get_items_dict() (pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
get_items_sql() (pyiron_base.database.generic.DatabaseAccess method)
get_job_id() (in module pyiron_base.database.jobtable)
(in module pyiron_base.jobs.datamining)
(pyiron_base.database.filetable.FileTable method)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
get_job_ids() (pyiron_base.database.interface.IsDatabase method)
(pyiron_base.project.generic.Project method)
get_job_status() (in module pyiron_base.database.jobtable)
(pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
(pyiron_base.project.generic.Project method)
get_job_status_from_file() (in module pyiron_base.database.filetable)
get_job_working_directory() (in module pyiron_base.database.jobtable)
(pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.generic.DatabaseAccess method)
(pyiron_base.project.generic.Project method)
get_jobs() (pyiron_base.database.interface.IsDatabase method)
(pyiron_base.project.generic.Project method)
get_jobs_status() (pyiron_base.project.generic.Project method)
get_pandas() (pyiron_base.storage.hdfio.FileHDFio method)
(pyiron_base.storage.parameters.GenericParameters method)
get_project_size() (pyiron_base.project.generic.Project method)
get_repository_status() (pyiron_base.project.generic.Project method)
(pyiron_base.project.maintenance.Maintenance static method)
get_size() (pyiron_base.storage.hdfio.FileHDFio method)
get_string_lst() (pyiron_base.storage.parameters.GenericParameters method)
get_table_headings() (pyiron_base.database.interface.IsDatabase method)
getdir() (in module pyiron_base.project.archiving.shared)
global_status (pyiron_base.project.maintenance.Maintenance property)
GlobalMaintenance (class in pyiron_base.project.maintenance)
gpus (pyiron_base.jobs.job.extension.server.generic.Server property)
groups() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.hdfio.FileHDFio method)
H
h5() (pyiron_base.utils.parser.LogTag method)
h5_dict (pyiron_base.utils.parser.LogTag property)
h5_path (pyiron_base.jobs.job.path.JobPath property)
(pyiron_base.storage.hdfio.DummyHDFio property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
handle_failed_job() (in module pyiron_base.jobs.job.runfunction)
handle_finished_job() (in module pyiron_base.jobs.job.runfunction)
has_array() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
has_keys() (pyiron_base.storage.datacontainer.DataContainerBase method)
HasDatabase (class in pyiron_base.interfaces.object)
HasDict (class in pyiron_base.interfaces.has_dict)
HasGroups (class in pyiron_base.interfaces.has_groups)
HasHDF (class in pyiron_base.interfaces.has_hdf)
HasStorage (class in pyiron_base.interfaces.object)
HasStoredTraits (class in pyiron_base.storage.has_stored_traits)
hd_copy() (pyiron_base.storage.hdfio.FileHDFio method)
HDF5Content (class in pyiron_base.jobs.job.core)
HDFStub (class in pyiron_base.storage.hdfstub)
history (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.path.ProjectPath property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
I
id (pyiron_base.jobs.job.core.JobCore property)
import_class() (in module pyiron_base.utils.instance)
import_jobs() (in module pyiron_base.project.archiving.import_archive)
ImportAlarm (class in pyiron_base.utils.error)
init_table() (pyiron_base.database.filetable.FileTable method)
initialized (pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
input (pyiron_base.jobs.job.template.TemplateJob property)
(pyiron_base.jobs.master.generic.GenericMaster property)
InputList (class in pyiron_base.storage.inputlist)
insert() (pyiron_base.storage.datacontainer.DataContainerBase method)
inspect (pyiron_base.project.generic.Project property)
inspect() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
install_dialog() (in module pyiron_base.state.install)
install_pyiron() (in module pyiron_base.state.install)
interactive_close() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.master.generic.GenericMaster method)
interactive_fetch() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.generic.GenericMaster method)
interactive_flush() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.master.generic.GenericMaster method)
interactive_flush_frequency (pyiron_base.jobs.job.interactive.InteractiveBase property)
interactive_is_activated() (pyiron_base.jobs.job.interactive.InteractiveBase method)
interactive_open() (pyiron_base.jobs.job.interactive.InteractiveBase method)
interactive_ref_job_initialize() (pyiron_base.jobs.master.parallel.ParallelMaster method)
interactive_store_in_cache() (pyiron_base.jobs.job.interactive.InteractiveBase method)
interactive_write_frequency (pyiron_base.jobs.job.interactive.InteractiveBase property)
InteractiveBase (class in pyiron_base.jobs.job.interactive)
InteractiveWrapper (class in pyiron_base.jobs.master.interactivewrapper)
is_compressed() (pyiron_base.jobs.job.core.JobCore method)
is_empty (pyiron_base.jobs.job.path.JobPath property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
is_finished() (pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
is_func() (pyiron_base.utils.parser.LogTag method)
is_item() (pyiron_base.utils.parser.LogTag method)
is_master_id() (pyiron_base.jobs.job.core.JobCore method)
is_open (pyiron_base.storage.hdfio.FileHDFio attribute)
is_root (pyiron_base.jobs.job.path.JobPath property)
(pyiron_base.storage.hdfio.FileHDFio attribute)
is_self_archived() (pyiron_base.jobs.job.core.JobCore method)
is_within_directory() (in module pyiron_base.utils.safetar)
IsDatabase (class in pyiron_base.database.interface)
item_update() (pyiron_base.database.interface.IsDatabase method)
items() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.FileHDFio method)
iter_groups() (pyiron_base.project.generic.Project method)
iter_jobs() (pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.project.generic.Project method)
iter_output() (pyiron_base.project.generic.Project method)
J
job (pyiron_base.jobs.job.toolkit.BaseTools property)
(pyiron_base.project.generic.Creator property)
job_class_dict (pyiron_base.jobs.job.jobtype.JobTypeChoice property)
job_file_name() (pyiron_base.jobs.job.generic.GenericJob method)
job_id (pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.jobs.job.extension.jobstatus.JobStatus property)
job_info_str (pyiron_base.jobs.job.core.JobCore property)
job_name (pyiron_base.jobs.job.core.JobCore property)
job_name() (pyiron_base.jobs.master.parallel.JobGenerator method)
(pyiron_base.project.generic.Creator static method)
job_name_contains() (pyiron_base.jobs.datamining.JobFilters static method)
job_object_dict (pyiron_base.jobs.master.generic.GenericMaster property)
job_status (pyiron_base.jobs.datamining.TableJob property)
job_table() (pyiron_base.database.interface.IsDatabase method)
(pyiron_base.project.generic.Project method)
job_type (pyiron_base.jobs.job.generic.GenericJob property)
(pyiron_base.project.generic.Project attribute)
job_type() (pyiron_base.jobs.datamining.JobFilters static method)
job_wrapper_function() (in module pyiron_base.jobs.job.wrapper)
JobCore (class in pyiron_base.jobs.job.core)
JobFactory (class in pyiron_base.jobs.job.factory)
(class in pyiron_base.jobs.job.jobtype)
JobFactoryCore (class in pyiron_base.jobs.job.factory)
JobFilters (class in pyiron_base.jobs.datamining)
JobGenerator (class in pyiron_base.jobs.master.parallel)
JobInspector (class in pyiron_base.project.jobloader)
JobLoader (class in pyiron_base.project.jobloader)
JobPath (class in pyiron_base.jobs.job.path)
JobStatus (class in pyiron_base.jobs.job.extension.jobstatus)
JobType (class in pyiron_base.jobs.job.jobtype)
JobTypeChoice (class in pyiron_base.jobs.job.jobtype)
JobWrapper (class in pyiron_base.jobs.job.wrapper)
join() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
K
key_dict (pyiron_base.utils.parser.LogTag property)
keys() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.FileHDFio method)
(pyiron_base.storage.parameters.GenericParameters method)
kick() (pyiron_base.database.generic.ConnectionWatchDog method)
kill() (pyiron_base.database.generic.ConnectionWatchDog method)
(pyiron_base.jobs.job.generic.GenericJob method)
L
line_skip() (pyiron_base.utils.parser.LogTag method)
list() (pyiron_base.jobs.job.extension.files.File method)
(pyiron_base.jobs.job.extension.files.FileBrowser method)
(pyiron_base.state.publications.Publications method)
list_all() (pyiron_base.interfaces.has_groups.HasGroups method)
list_arrays() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
list_childs() (pyiron_base.jobs.job.core.JobCore method)
list_clusters() (pyiron_base.project.generic.Project static method)
list_dirs() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.FileHDFio method)
list_executables() (pyiron_base.jobs.job.extension.executable.Executable method)
list_files() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.project.generic.Project method)
list_groups() (pyiron_base.interfaces.has_groups.HasGroups method)
list_groups_and_nodes() (in module pyiron_base.storage.helper_functions)
list_nodes() (pyiron_base.interfaces.has_groups.HasGroups method)
list_publications() (pyiron_base.project.generic.Project static method)
list_queues() (pyiron_base.jobs.job.extension.server.generic.Server static method)
listdir() (pyiron_base.project.path.ProjectPath method)
listdirs() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.storage.hdfio.FileHDFio method)
ListMaster (class in pyiron_base.jobs.master.list)
load (pyiron_base.project.generic.Project property)
load() (in module pyiron_base.project.external)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.storage.filedata.FileLoader method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
(pyiron_base.storage.hdfstub.HDFStub method)
load_default() (pyiron_base.storage.parameters.GenericParameters method)
load_file() (in module pyiron_base.storage.filedata)
load_from_jobpath() (pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
load_from_jobpath_string() (pyiron_base.project.generic.Project static method)
load_string() (pyiron_base.storage.parameters.GenericParameters method)
local (pyiron_base.project.maintenance.Maintenance property)
LocalMaintenance (class in pyiron_base.project.maintenance)
lock() (pyiron_base.interfaces.lockable.Lockable method)
(pyiron_base.storage.has_stored_traits.HasStoredTraits method)
Lockable (class in pyiron_base.interfaces.lockable)
Locked
LockedWarning
logger (pyiron_base.jobs.job.generic.GenericJob property)
(pyiron_base.state.settings.Settings property)
(pyiron_base.state.State attribute)
(pyiron_base.state.State property)
login_user (pyiron_base.state.settings.Settings property)
Logstatus (class in pyiron_base.utils.parser)
LogTag (class in pyiron_base.utils.parser)
M
main() (in module pyiron_base.cli.control)
(in module pyiron_base.cli.install)
(in module pyiron_base.cli.ls)
(in module pyiron_base.cli.reloadfile)
(in module pyiron_base.cli.rm)
(in module pyiron_base.cli.wrapper)
Maintenance (class in pyiron_base.project.maintenance)
maintenance (pyiron_base.project.generic.Project property)
mark() (pyiron_base.storage.datacontainer.DataContainerBase method)
master (pyiron_base.jobs.master.parallel.JobGenerator property)
master_id (pyiron_base.jobs.job.core.JobCore property)
memory_limit (pyiron_base.jobs.job.extension.server.generic.Server property)
mode (pyiron_base.jobs.job.extension.server.runmode.Runmode property)
modify() (pyiron_base.storage.parameters.GenericParameters method)
modify_job() (pyiron_base.jobs.master.parallel.JobGenerator static method)
module
pyiron_base
pyiron_base.cli
pyiron_base.cli.control
pyiron_base.cli.install
pyiron_base.cli.ls
pyiron_base.cli.reloadfile
pyiron_base.cli.rm
pyiron_base.cli.wrapper
pyiron_base.database
pyiron_base.database.filetable
pyiron_base.database.generic
pyiron_base.database.interface
pyiron_base.database.jobtable
pyiron_base.database.manager
pyiron_base.database.performance
pyiron_base.database.sqlcolumnlength
pyiron_base.database.tables
pyiron_base.interfaces
pyiron_base.interfaces.factory
pyiron_base.interfaces.has_dict
pyiron_base.interfaces.has_groups
pyiron_base.interfaces.has_hdf
pyiron_base.interfaces.lockable
pyiron_base.interfaces.object
pyiron_base.interfaces.singleton
pyiron_base.jobs
pyiron_base.jobs.datamining
pyiron_base.jobs.dynamic
pyiron_base.jobs.flex
pyiron_base.jobs.flex.executablecontainer
pyiron_base.jobs.flex.factory
pyiron_base.jobs.flex.pythonfunctioncontainer
pyiron_base.jobs.job
pyiron_base.jobs.job.core
pyiron_base.jobs.job.extension
pyiron_base.jobs.job.extension.executable
pyiron_base.jobs.job.extension.files
pyiron_base.jobs.job.extension.jobstatus
pyiron_base.jobs.job.extension.server
pyiron_base.jobs.job.extension.server.generic
pyiron_base.jobs.job.extension.server.queuestatus
pyiron_base.jobs.job.extension.server.runmode
pyiron_base.jobs.job.factory
pyiron_base.jobs.job.generic
pyiron_base.jobs.job.interactive
pyiron_base.jobs.job.jobtype
pyiron_base.jobs.job.path
pyiron_base.jobs.job.runfunction
pyiron_base.jobs.job.template
pyiron_base.jobs.job.toolkit
pyiron_base.jobs.job.util
pyiron_base.jobs.job.wrapper
pyiron_base.jobs.master
pyiron_base.jobs.master.flexible
pyiron_base.jobs.master.generic
pyiron_base.jobs.master.interactivewrapper
pyiron_base.jobs.master.list
pyiron_base.jobs.master.parallel
pyiron_base.jobs.master.submissionstatus
pyiron_base.jobs.script
pyiron_base.jobs.worker
pyiron_base.project
pyiron_base.project.archiving
pyiron_base.project.archiving.export_archive
pyiron_base.project.archiving.import_archive
pyiron_base.project.archiving.shared
pyiron_base.project.data
pyiron_base.project.external
pyiron_base.project.generic
pyiron_base.project.jobloader
pyiron_base.project.maintenance
pyiron_base.project.path
pyiron_base.project.size
pyiron_base.project.update
pyiron_base.project.update.pyiron_base_03x_to_04x
pyiron_base.state
pyiron_base.state.install
pyiron_base.state.logger
pyiron_base.state.publications
pyiron_base.state.queue_adapter
pyiron_base.state.settings
pyiron_base.state.signal
pyiron_base.state.update
pyiron_base.storage
pyiron_base.storage.datacontainer
pyiron_base.storage.filedata
pyiron_base.storage.fileio
pyiron_base.storage.flattenedstorage
pyiron_base.storage.has_stored_traits
pyiron_base.storage.hdfio
pyiron_base.storage.hdfstub
pyiron_base.storage.helper_functions
pyiron_base.storage.inputlist
pyiron_base.storage.parameters
pyiron_base.utils
pyiron_base.utils.deprecate
pyiron_base.utils.error
pyiron_base.utils.instance
pyiron_base.utils.jedi
pyiron_base.utils.parser
pyiron_base.utils.safetar
pyiron_base.utils.units
move_to() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.master.generic.GenericMaster method)
(pyiron_base.project.generic.Project method)
mpi (pyiron_base.jobs.job.extension.executable.Executable property)
multi_word_separator (pyiron_base.storage.parameters.GenericParameters property)
multiprocess_wrapper() (in module pyiron_base.jobs.job.runfunction)
N
name (pyiron_base.jobs.datamining.PyironTable property)
(pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.project.generic.Project property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
new_hdf (pyiron_base.jobs.job.extension.server.generic.Server property)
new_job_id() (in module pyiron_base.project.archiving.export_archive)
next() (pyiron_base.jobs.master.parallel.JobGenerator method)
nodes() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
(pyiron_base.storage.hdfio.FileHDFio method)
Notebook (class in pyiron_base.project.external)
number_jobs_total (pyiron_base.jobs.master.parallel.ParallelMaster property)
O
open() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.path.ProjectPath method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.hdfio.FileHDFio method)
open_connection() (pyiron_base.database.manager.DatabaseManager method)
open_local_sqlite_connection() (pyiron_base.database.manager.DatabaseManager method)
output (pyiron_base.jobs.job.template.TemplateJob property)
output_to_pandas() (pyiron_base.jobs.master.parallel.ParallelMaster method)
OwnNotebookNode (class in pyiron_base.storage.filedata)
P
pack() (pyiron_base.project.generic.Project method)
ParallelMaster (class in pyiron_base.jobs.master.parallel)
parameter_list (pyiron_base.jobs.master.parallel.JobGenerator property)
parameter_list_cached (pyiron_base.jobs.master.parallel.JobGenerator property)
parent_group (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.generic.Project property)
parent_id (pyiron_base.jobs.job.core.JobCore property)
parse (pyiron_base.storage.fileio.FileAdapter attribute)
path (pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.project.generic.Project attribute)
(pyiron_base.project.path.GenericPath property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
performance() (pyiron_base.database.performance.DatabaseStatistics method)
pop() (pyiron_base.jobs.master.generic.GenericMaster method)
print_message() (pyiron_base.jobs.job.generic.GenericError method)
print_queue() (pyiron_base.jobs.job.generic.GenericError method)
Project (class in pyiron_base.project.generic)
project (pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.storage.hdfio.DummyHDFio property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
project_check_enabled (pyiron_base.database.manager.DatabaseManager property)
project_hdf5 (pyiron_base.jobs.job.core.JobCore property)
project_path (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.path.GenericPath property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
project_to_watch (pyiron_base.jobs.worker.WorkerJob property)
ProjectData (class in pyiron_base.project.data)
ProjectHDFio (class in pyiron_base.storage.hdfio)
ProjectPath (class in pyiron_base.project.path)
publication (pyiron_base.state.settings.Settings property)
publication_add() (pyiron_base.state.settings.Settings method)
publication_lst (pyiron_base.state.settings.Settings property)
Publications (class in pyiron_base.state.publications)
publications (pyiron_base.state.State attribute)
(pyiron_base.state.State property)
put() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.storage.hdfio.FileHDFio method)
pyiron_base
module
pyiron_base.cli
module
pyiron_base.cli.control
module
pyiron_base.cli.install
module
pyiron_base.cli.ls
module
pyiron_base.cli.reloadfile
module
pyiron_base.cli.rm
module
pyiron_base.cli.wrapper
module
pyiron_base.database
module
pyiron_base.database.filetable
module
pyiron_base.database.generic
module
pyiron_base.database.interface
module
pyiron_base.database.jobtable
module
pyiron_base.database.manager
module
pyiron_base.database.performance
module
pyiron_base.database.sqlcolumnlength
module
pyiron_base.database.tables
module
pyiron_base.interfaces
module
pyiron_base.interfaces.factory
module
pyiron_base.interfaces.has_dict
module
pyiron_base.interfaces.has_groups
module
pyiron_base.interfaces.has_hdf
module
pyiron_base.interfaces.lockable
module
pyiron_base.interfaces.object
module
pyiron_base.interfaces.singleton
module
pyiron_base.jobs
module
pyiron_base.jobs.datamining
module
pyiron_base.jobs.dynamic
module
pyiron_base.jobs.flex
module
pyiron_base.jobs.flex.executablecontainer
module
pyiron_base.jobs.flex.factory
module
pyiron_base.jobs.flex.pythonfunctioncontainer
module
pyiron_base.jobs.job
module
pyiron_base.jobs.job.core
module
pyiron_base.jobs.job.extension
module
pyiron_base.jobs.job.extension.executable
module
pyiron_base.jobs.job.extension.files
module
pyiron_base.jobs.job.extension.jobstatus
module
pyiron_base.jobs.job.extension.server
module
pyiron_base.jobs.job.extension.server.generic
module
pyiron_base.jobs.job.extension.server.queuestatus
module
pyiron_base.jobs.job.extension.server.runmode
module
pyiron_base.jobs.job.factory
module
pyiron_base.jobs.job.generic
module
pyiron_base.jobs.job.interactive
module
pyiron_base.jobs.job.jobtype
module
pyiron_base.jobs.job.path
module
pyiron_base.jobs.job.runfunction
module
pyiron_base.jobs.job.template
module
pyiron_base.jobs.job.toolkit
module
pyiron_base.jobs.job.util
module
pyiron_base.jobs.job.wrapper
module
pyiron_base.jobs.master
module
pyiron_base.jobs.master.flexible
module
pyiron_base.jobs.master.generic
module
pyiron_base.jobs.master.interactivewrapper
module
pyiron_base.jobs.master.list
module
pyiron_base.jobs.master.parallel
module
pyiron_base.jobs.master.submissionstatus
module
pyiron_base.jobs.script
module
pyiron_base.jobs.worker
module
pyiron_base.project
module
pyiron_base.project.archiving
module
pyiron_base.project.archiving.export_archive
module
pyiron_base.project.archiving.import_archive
module
pyiron_base.project.archiving.shared
module
pyiron_base.project.data
module
pyiron_base.project.external
module
pyiron_base.project.generic
module
pyiron_base.project.jobloader
module
pyiron_base.project.maintenance
module
pyiron_base.project.path
module
pyiron_base.project.size
module
pyiron_base.project.update
module
pyiron_base.project.update.pyiron_base_03x_to_04x
module
pyiron_base.state
module
pyiron_base.state.install
module
pyiron_base.state.logger
module
pyiron_base.state.publications
module
pyiron_base.state.queue_adapter
module
pyiron_base.state.settings
module
pyiron_base.state.signal
module
pyiron_base.state.update
module
pyiron_base.storage
module
pyiron_base.storage.datacontainer
module
pyiron_base.storage.filedata
module
pyiron_base.storage.fileio
module
pyiron_base.storage.flattenedstorage
module
pyiron_base.storage.has_stored_traits
module
pyiron_base.storage.hdfio
module
pyiron_base.storage.hdfstub
module
pyiron_base.storage.helper_functions
module
pyiron_base.storage.inputlist
module
pyiron_base.storage.parameters
module
pyiron_base.utils
module
pyiron_base.utils.deprecate
module
pyiron_base.utils.error
module
pyiron_base.utils.instance
module
pyiron_base.utils.jedi
module
pyiron_base.utils.parser
module
pyiron_base.utils.safetar
module
pyiron_base.utils.units
module
pyiron_base_03x_to_04x() (in module pyiron_base.project.update.pyiron_base_03x_to_04x)
pyiron_publication (pyiron_base.state.publications.Publications property)
pyiron_table (pyiron_base.jobs.datamining.TableJob property)
PyironFactory (class in pyiron_base.interfaces.factory)
PyironObject (class in pyiron_base.interfaces.object)
PyironTable (class in pyiron_base.jobs.datamining)
PyironUnitRegistry (class in pyiron_base.utils.units)
python_function (pyiron_base.jobs.flex.pythonfunctioncontainer.PythonFunctionContainerJob property)
PythonFunctionContainerJob (class in pyiron_base.jobs.flex.pythonfunctioncontainer)
PythonTemplateJob (class in pyiron_base.jobs.job.template)
Q
quantity_dict (pyiron_base.utils.units.PyironUnitRegistry property)
query_for_element() (pyiron_base.database.generic.DatabaseAccess method)
queue (pyiron_base.jobs.job.extension.server.generic.Server property)
queue_adapter (pyiron_base.state.settings.Settings property)
(pyiron_base.state.State attribute)
(pyiron_base.state.State property)
queue_check_job_is_waiting_or_running() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project static method)
queue_delete_job() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project method)
queue_enable_reservation() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project static method)
queue_id (pyiron_base.jobs.job.extension.server.generic.Server property)
(pyiron_base.jobs.job.generic.GenericJob property)
queue_info_by_job_id() (in module pyiron_base.jobs.job.extension.server.queuestatus)
queue_is_empty() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project static method)
queue_limit_factor (pyiron_base.jobs.worker.WorkerJob property)
queue_list (pyiron_base.jobs.job.extension.server.generic.Server property)
queue_table() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project method)
queue_table_global() (pyiron_base.project.generic.Project method)
queue_view (pyiron_base.jobs.job.extension.server.generic.Server property)
QueueAdapters (class in pyiron_base.state.queue_adapter)
R
raise_iter() (pyiron_base.utils.parser.Logstatus method)
read() (in module pyiron_base.storage.fileio)
(pyiron_base.project.data.ProjectData method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
read_dict_from_hdf() (in module pyiron_base.storage.helper_functions)
(pyiron_base.storage.hdfio.FileHDFio method)
read_input() (pyiron_base.storage.parameters.GenericParameters method)
read_only (pyiron_base.interfaces.lockable.Lockable property)
(pyiron_base.storage.has_stored_traits.HasStoredTraits attribute)
(pyiron_base.storage.has_stored_traits.HasStoredTraits property)
recursive_load_from_hdf() (in module pyiron_base.jobs.job.core)
ref_job (pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper property)
(pyiron_base.jobs.master.parallel.ParallelMaster property)
ref_job_initialize() (pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
ref_project (pyiron_base.jobs.datamining.TableJob property)
refill_dict() (pyiron_base.jobs.datamining.PyironTable method)
refresh() (pyiron_base.jobs.master.submissionstatus.SubmissionStatus method)
refresh_job_status() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.project.generic.Project method)
refresh_job_status_based_on_job_id() (pyiron_base.project.generic.Project method)
refresh_job_status_based_on_queue_status() (pyiron_base.project.generic.Project method)
refresh_status() (pyiron_base.jobs.job.extension.jobstatus.JobStatus method)
refresh_submission_status() (pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
regexp() (pyiron_base.database.generic.DatabaseAccess static method)
register() (in module pyiron_base.cli.install)
(in module pyiron_base.cli.ls)
(in module pyiron_base.cli.reloadfile)
(in module pyiron_base.cli.rm)
(in module pyiron_base.cli.wrapper)
(pyiron_base.jobs.job.jobtype.JobType class method)
(pyiron_base.storage.filedata.FileLoader class method)
(pyiron_base.storage.hdfstub.HDFStub class method)
register_tools() (pyiron_base.project.generic.Project class method)
relocate_hdf5() (pyiron_base.jobs.job.core.JobCore method)
remove() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.project.generic.Project method)
remove_and_reset_id() (pyiron_base.jobs.job.generic.GenericJob method)
remove_child() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
remove_file() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.FileHDFio method)
remove_group() (pyiron_base.storage.hdfio.FileHDFio method)
remove_job() (pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
remove_jobs() (pyiron_base.project.generic.Project method)
remove_jobs_silently() (pyiron_base.project.generic.Project method)
remove_keys() (pyiron_base.storage.parameters.GenericParameters method)
removedirs() (pyiron_base.project.path.ProjectPath method)
rename() (pyiron_base.jobs.job.core.JobCore method)
replace_char_dict (pyiron_base.storage.parameters.GenericParameters property)
reset() (pyiron_base.state.publications.Publications method)
reset_iter() (pyiron_base.utils.parser.Logstatus method)
reset_job_id() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
resolve_dynamic_variable() (pyiron_base.utils.parser.LogTag method)
resource_paths (pyiron_base.state.settings.Settings property)
restart() (pyiron_base.jobs.job.generic.GenericJob method)
restart_file_dict (pyiron_base.jobs.job.generic.GenericJob property)
restart_file_list (pyiron_base.jobs.job.generic.GenericJob property)
retrieve_job() (in module pyiron_base.jobs.job.extension.server.queuestatus)
retry() (in module pyiron_base.utils.error)
rewrite_hdf() (pyiron_base.interfaces.has_hdf.HasHDF method)
rewrite_hdf5() (pyiron_base.storage.hdfio.FileHDFio method)
root_path (pyiron_base.project.generic.Project attribute)
(pyiron_base.project.path.GenericPath property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
rows() (pyiron_base.utils.parser.LogTag method)
run() (pyiron_base.database.generic.ConnectionWatchDog method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.wrapper.JobWrapper method)
run_if_interactive() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
run_if_interactive_non_modal() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.master.generic.GenericMaster method)
run_if_lib() (pyiron_base.jobs.script.ScriptJob method)
run_if_modal() (pyiron_base.jobs.job.generic.GenericJob method)
run_if_refresh() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
run_if_scheduler() (pyiron_base.jobs.job.generic.GenericJob method)
run_job_with_parameter_repair() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_executor() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_executor_flux() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_executor_futures() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_manually() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_modal() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_non_modal() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_queue() (in module pyiron_base.jobs.job.runfunction)
run_job_with_runmode_srun() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_busy() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_collect() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_created() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_finished() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_initialized() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_refresh() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_running() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_submitted() (in module pyiron_base.jobs.job.runfunction)
run_job_with_status_suspended() (in module pyiron_base.jobs.job.runfunction)
run_mode (pyiron_base.jobs.job.extension.server.generic.Server property)
run_static() (pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
(pyiron_base.jobs.flex.pythonfunctioncontainer.PythonFunctionContainerJob method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.jobs.worker.WorkerJob method)
run_static_with_database() (pyiron_base.jobs.worker.WorkerJob method)
run_static_without_database() (pyiron_base.jobs.worker.WorkerJob method)
run_time (pyiron_base.jobs.job.extension.server.generic.Server property)
run_time_decorator() (in module pyiron_base.jobs.job.runfunction)
run_time_to_db() (pyiron_base.jobs.job.generic.GenericJob method)
Runmode (class in pyiron_base.jobs.job.extension.server.runmode)
S
safe_extract() (in module pyiron_base.utils.safetar)
sample() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
save() (pyiron_base.interfaces.object.HasDatabase method)
(pyiron_base.jobs.flex.pythonfunctioncontainer.PythonFunctionContainerJob method)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.list.ListMaster method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
script_path (pyiron_base.jobs.script.ScriptJob property)
ScriptJob (class in pyiron_base.jobs.script)
search() (pyiron_base.storage.datacontainer.DataContainerBase method)
self_archive() (pyiron_base.jobs.job.core.JobCore method)
self_unarchive() (pyiron_base.jobs.job.core.JobCore method)
send_to_database() (pyiron_base.jobs.job.generic.GenericJob method)
send_to_db (pyiron_base.jobs.job.extension.server.generic.Server property)
sentinel() (in module pyiron_base.interfaces.lockable)
separator_char (pyiron_base.storage.parameters.GenericParameters property)
Server (class in pyiron_base.jobs.job.extension.server.generic)
server (pyiron_base.jobs.job.generic.GenericJob property)
set() (pyiron_base.storage.parameters.GenericParameters method)
set_array() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
set_child_id_func() (pyiron_base.jobs.master.generic.GenericMaster method)
set_dict() (pyiron_base.storage.parameters.GenericParameters method)
set_input_to_read_only() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.generic.GenericMaster method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
(pyiron_base.jobs.script.ScriptJob method)
set_item() (pyiron_base.utils.parser.LogTag method)
set_job_status() (in module pyiron_base.database.jobtable)
(pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.interface.IsDatabase method)
(pyiron_base.project.generic.Project method)
set_job_type() (pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
set_logging_level() (in module pyiron_base.state.logger)
(pyiron_base.project.generic.Project static method)
set_value() (pyiron_base.storage.parameters.GenericParameters method)
Settings (class in pyiron_base.state.settings)
settings (pyiron_base.state.State attribute)
(pyiron_base.state.State property)
setup_instance() (pyiron_base.storage.has_stored_traits.HasStoredTraits method)
setup_logger() (in module pyiron_base.state.logger)
(pyiron_base.jobs.job.wrapper.JobWrapper static method)
show() (pyiron_base.state.publications.Publications method)
show_hdf() (pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.master.parallel.ParallelMaster method)
(pyiron_base.storage.hdfio.FileHDFio method)
signal_intercept() (pyiron_base.jobs.job.generic.GenericJob method)
Singleton (class in pyiron_base.interfaces.singleton)
size (pyiron_base.project.generic.Project property)
sleep_interval (pyiron_base.jobs.worker.WorkerJob property)
split() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
sql_connection_string (pyiron_base.database.manager.DatabaseManager property)
sql_query (pyiron_base.project.generic.Project attribute)
(pyiron_base.storage.hdfio.ProjectHDFio property)
sql_table_name (pyiron_base.database.manager.DatabaseManager property)
sql_view_connection_string (pyiron_base.database.manager.DatabaseManager property)
sql_view_table_name (pyiron_base.database.manager.DatabaseManager property)
State (class in pyiron_base.state)
state (pyiron_base.project.generic.Project property)
static_isinstance() (in module pyiron_base.utils.instance)
status (pyiron_base.jobs.job.core.JobCore property)
STATUS (pyiron_base.jobs.master.submissionstatus.SubmissionStatus attribute)
storage (pyiron_base.interfaces.object.HasStorage property)
store_custom_output_dict() (pyiron_base.project.external.Notebook static method)
string (pyiron_base.jobs.job.extension.jobstatus.JobStatus property)
(pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
structure_id (pyiron_base.jobs.job.extension.server.generic.Server property)
SubmissionStatus (class in pyiron_base.jobs.master.submissionstatus)
submit_next() (pyiron_base.jobs.master.submissionstatus.SubmissionStatus method)
submitted (pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
submitted_jobs (pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
suspend() (pyiron_base.jobs.job.generic.GenericJob method)
switch_cluster() (pyiron_base.project.generic.Project static method)
switch_to_central_database() (pyiron_base.database.manager.DatabaseManager method)
(pyiron_base.project.generic.Project method)
switch_to_local_database() (pyiron_base.database.manager.DatabaseManager method)
(pyiron_base.project.generic.Project method)
switch_to_user_mode() (pyiron_base.database.manager.DatabaseManager method)
(pyiron_base.project.generic.Project method)
switch_to_viewer_mode() (pyiron_base.database.manager.DatabaseManager method)
(pyiron_base.project.generic.Project method)
symlink() (pyiron_base.project.generic.Project method)
T
table() (pyiron_base.project.generic.Creator method)
table_name (pyiron_base.storage.parameters.GenericParameters property)
TableJob (class in pyiron_base.jobs.datamining)
tag_dict (pyiron_base.utils.parser.LogTag property)
tag_first_word (pyiron_base.utils.parser.LogTag property)
tag_name (pyiron_base.utils.parser.LogTag property)
tail() (pyiron_base.jobs.job.extension.files.File method)
(pyiron_base.jobs.job.extension.files.FileBrowser method)
TemplateJob (class in pyiron_base.jobs.job.template)
test_split() (pyiron_base.utils.parser.LogTag method)
threads (pyiron_base.jobs.job.extension.server.generic.Server property)
to_builtin() (pyiron_base.storage.datacontainer.DataContainerBase method)
to_dict() (pyiron_base.interfaces.has_dict.HasDict method)
(pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
(pyiron_base.jobs.flex.pythonfunctioncontainer.PythonFunctionContainerJob method)
(pyiron_base.jobs.job.extension.executable.Executable method)
(pyiron_base.jobs.job.extension.server.generic.Server method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.script.ScriptJob method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.parameters.GenericParameters method)
to_hdf() (pyiron_base.interfaces.has_hdf.HasHDF method)
(pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.jobs.job.extension.server.generic.Server method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.job.template.TemplateJob method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.generic.GenericMaster method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
(pyiron_base.storage.parameters.GenericParameters method)
(pyiron_base.utils.parser.Logstatus method)
to_object() (in module pyiron_base.storage.hdfstub)
(pyiron_base.jobs.job.core.JobCore method)
(pyiron_base.storage.hdfio.DummyHDFio method)
(pyiron_base.storage.hdfio.ProjectHDFio method)
to_pandas() (pyiron_base.storage.flattenedstorage.FlattenedStorage method)
Toolkit (class in pyiron_base.jobs.job.toolkit)
top_path() (pyiron_base.database.manager.DatabaseManager method)
total_jobs (pyiron_base.jobs.master.submissionstatus.SubmissionStatus property)
total_lst_of_keys() (pyiron_base.jobs.datamining.PyironTable static method)
transfer_from_remote() (pyiron_base.jobs.job.generic.GenericJob method)
translate() (pyiron_base.utils.parser.LogTag method)
U
unit_dict (pyiron_base.utils.units.PyironUnitRegistry property)
UnitConverter (class in pyiron_base.utils.units)
unlink() (pyiron_base.project.generic.Project method)
unlock() (pyiron_base.storage.has_stored_traits.HasStoredTraits method)
unlocked() (pyiron_base.interfaces.lockable.Lockable method)
unpack() (pyiron_base.project.generic.Project method)
unregister() (pyiron_base.jobs.job.jobtype.JobType class method)
update (pyiron_base.project.maintenance.Maintenance property)
update() (pyiron_base.database.filetable.FileTable method)
(pyiron_base.database.manager.DatabaseManager method)
(pyiron_base.state.queue_adapter.QueueAdapters method)
(pyiron_base.state.settings.Settings method)
,
[1]
(pyiron_base.state.State method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
update_from_remote() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project method)
update_hdf_types() (pyiron_base.project.maintenance.LocalMaintenance method)
update_id_lst() (in module pyiron_base.project.archiving.import_archive)
update_master() (pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.master.generic.GenericMaster method)
update_project() (in module pyiron_base.project.archiving.export_archive)
update_pyiron_tables() (pyiron_base.project.maintenance.LocalMaintenance method)
update_table() (pyiron_base.jobs.datamining.TableJob method)
UpdateMaintenance (class in pyiron_base.project.maintenance)
user (pyiron_base.project.generic.Project attribute)
(pyiron_base.storage.hdfio.ProjectHDFio property)
using_local_database (pyiron_base.database.manager.DatabaseManager property)
V
val_only (pyiron_base.storage.parameters.GenericParameters property)
validate_que_request() (in module pyiron_base.jobs.job.extension.server.queuestatus)
validate_ready_to_run() (pyiron_base.jobs.datamining.TableJob method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.job.interactive.InteractiveBase method)
(pyiron_base.jobs.master.flexible.FlexibleMaster method)
(pyiron_base.jobs.master.interactivewrapper.InteractiveWrapper method)
(pyiron_base.jobs.script.ScriptJob method)
values() (pyiron_base.jobs.job.path.JobPath method)
(pyiron_base.project.generic.Project method)
(pyiron_base.storage.hdfio.FileHDFio method)
version (pyiron_base.jobs.job.extension.executable.Executable property)
(pyiron_base.jobs.job.generic.GenericJob property)
view_mode (pyiron_base.database.generic.DatabaseAccess property)
(pyiron_base.database.interface.IsDatabase property)
(pyiron_base.project.generic.Project attribute)
(pyiron_base.project.generic.Project property)
view_queues() (pyiron_base.jobs.job.extension.server.generic.Server static method)
viewer_mode (pyiron_base.database.generic.DatabaseAccess property)
(pyiron_base.database.interface.IsDatabase property)
W
wait_for_job() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project static method)
wait_for_jobs() (in module pyiron_base.jobs.job.extension.server.queuestatus)
(pyiron_base.project.generic.Project method)
wait_for_worker() (pyiron_base.jobs.worker.WorkerJob method)
walk() (pyiron_base.project.path.ProjectPath method)
warn_dynamic_job_classes() (in module pyiron_base.jobs.dynamic)
warn_if_failed() (pyiron_base.utils.error.ImportAlarm method)
worker_function() (in module pyiron_base.jobs.worker)
WorkerJob (class in pyiron_base.jobs.worker)
working_directory (pyiron_base.jobs.job.core.JobCore property)
(pyiron_base.jobs.job.generic.GenericJob property)
(pyiron_base.storage.hdfio.ProjectHDFio property)
wrap() (pyiron_base.utils.deprecate.Deprecator method)
wrap_executable() (pyiron_base.project.generic.Project method)
wrap_python_function() (pyiron_base.project.generic.Project method)
wrapper() (pyiron_base.utils.error.ImportAlarm method)
write (pyiron_base.storage.fileio.FileAdapter attribute)
write() (in module pyiron_base.storage.fileio)
(pyiron_base.project.data.ProjectData method)
(pyiron_base.storage.datacontainer.DataContainerBase method)
write_dict_to_hdf() (pyiron_base.storage.hdfio.FileHDFio method)
write_file() (pyiron_base.storage.parameters.GenericParameters method)
write_input() (pyiron_base.jobs.flex.executablecontainer.ExecutableContainerJob method)
(pyiron_base.jobs.job.generic.GenericJob method)
(pyiron_base.jobs.script.ScriptJob method)
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